Why nf-core sarek is my go-to for genomic pipelines
I've spent way too many hours manually stitching together GATK commands, which is exactly why nf-core sarek is such a breath of fresh air for anyone doing variant calling. If you've ever tried to build a bioinformatics pipeline from scratch, you know the drill: you start with a simple script, but three days later you're buried in a mess of incompatible tool versions, weird environment variables, and logs that don't tell you anything. Using a standardized pipeline like Sarek takes that massive headache and turns it into something actually manageable. ...